Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.8■□□□□ 0.44
Sox3P53784 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.79■□□□□ 0.44
Sox3P53784 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.79■□□□□ 0.44
Sox3P53784 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sox3P53784 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sox3P53784 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC17.78■□□□□ 0.44
Sox3P53784 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC17.78■□□□□ 0.44
Sox3P53784 Gm6211-202ENSMUST00000167849 925 ntBASIC17.78■□□□□ 0.44
Sox3P53784 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.78■□□□□ 0.44
Sox3P53784 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC17.78■□□□□ 0.44
Sox3P53784 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sox3P53784 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.78■□□□□ 0.44
Sox3P53784 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sox3P53784 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sox3P53784 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sox3P53784 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Sox3P53784 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sox3P53784 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sox3P53784 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.77■□□□□ 0.44
Sox3P53784 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sox3P53784 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sox3P53784 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sox3P53784 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sox3P53784 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Sox3P53784 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.77■□□□□ 0.44
Sox3P53784 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sox3P53784 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
Sox3P53784 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Sox3P53784 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Sox3P53784 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Sox3P53784 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Sox3P53784 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Sox3P53784 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Sox3P53784 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sox3P53784 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sox3P53784 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Sox3P53784 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.76■□□□□ 0.43
Sox3P53784 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Sox3P53784 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sox3P53784 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Sox3P53784 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.76■□□□□ 0.43
Sox3P53784 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Sox3P53784 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sox3P53784 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox3P53784 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Sox3P53784 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox3P53784 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Sox3P53784 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Sox3P53784 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Sox3P53784 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.75■□□□□ 0.43
Sox3P53784 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Sox3P53784 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Sox3P53784 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Sox3P53784 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Sox3P53784 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox3P53784 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox3P53784 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Sox3P53784 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.74■□□□□ 0.43
Sox3P53784 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.74■□□□□ 0.43
Sox3P53784 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Sox3P53784 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox3P53784 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Sox3P53784 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox3P53784 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox3P53784 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Sox3P53784 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox3P53784 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.73■□□□□ 0.43
Sox3P53784 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox3P53784 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox3P53784 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms