Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Chmp6P0C0A3 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp6P0C0A3 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.23■□□□□ 0.83
Chmp6P0C0A3 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Slc35b2-207ENSMUST00000226086 850 ntBASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
Chmp6P0C0A3 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Chmp6P0C0A3 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chmp6P0C0A3 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Chmp6P0C0A3 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chmp6P0C0A3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Chmp6P0C0A3 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.22■□□□□ 0.83
Chmp6P0C0A3 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chmp6P0C0A3 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.22■□□□□ 0.83
Chmp6P0C0A3 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Gm10849-201ENSMUST00000100397 618 ntBASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Gm7514-201ENSMUST00000209475 934 ntBASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp6P0C0A3 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Gm27405-201ENSMUST00000184201 112 ntBASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Gm7291-201ENSMUST00000199147 382 ntBASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp6P0C0A3 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp6P0C0A3 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms