Protein–RNA interactions for Protein: O35350

Capn1, Calpain-1 catalytic subunit, mousemouse

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Capn1O35350 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Capn1O35350 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Capn1O35350 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Capn1O35350 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC17.22■□□□□ 0.35
Capn1O35350 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Capn1O35350 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Capn1O35350 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Capn1O35350 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Capn1O35350 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.21■□□□□ 0.35
Capn1O35350 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Gm6420-201ENSMUST00000193885 723 ntBASIC17.21■□□□□ 0.35
Capn1O35350 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Capn1O35350 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Capn1O35350 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Capn1O35350 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Capn1O35350 Gm43182-201ENSMUST00000199476 2528 ntBASIC17.2■□□□□ 0.34
Capn1O35350 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Capn1O35350 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 Gm7290-201ENSMUST00000104990 617 ntBASIC17.2■□□□□ 0.34
Capn1O35350 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.2■□□□□ 0.34
Capn1O35350 Gm12918-201ENSMUST00000120234 636 ntBASIC17.2■□□□□ 0.34
Capn1O35350 Gm15710-201ENSMUST00000121821 636 ntBASIC17.2■□□□□ 0.34
Capn1O35350 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Capn1O35350 Gm5075-201ENSMUST00000196916 622 ntBASIC17.2■□□□□ 0.34
Capn1O35350 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.2■□□□□ 0.34
Capn1O35350 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Capn1O35350 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.2■□□□□ 0.34
Capn1O35350 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.2■□□□□ 0.34
Capn1O35350 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
Capn1O35350 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Capn1O35350 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Capn1O35350 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Capn1O35350 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Capn1O35350 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Capn1O35350 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Capn1O35350 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Capn1O35350 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
Capn1O35350 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Capn1O35350 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.19■□□□□ 0.34
Capn1O35350 Gm6365-201ENSMUST00000054711 744 ntBASIC17.19■□□□□ 0.34
Capn1O35350 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Capn1O35350 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.18■□□□□ 0.34
Capn1O35350 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.18■□□□□ 0.34
Capn1O35350 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Capn1O35350 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Capn1O35350 Nespas-201ENSMUST00000143738 1083 ntBASIC17.18■□□□□ 0.34
Capn1O35350 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Capn1O35350 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Capn1O35350 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
Capn1O35350 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.17■□□□□ 0.34
Capn1O35350 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.17■□□□□ 0.34
Capn1O35350 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC17.17■□□□□ 0.34
Capn1O35350 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.17■□□□□ 0.34
Capn1O35350 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Capn1O35350 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Capn1O35350 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Capn1O35350 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Capn1O35350 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
Capn1O35350 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.16■□□□□ 0.34
Capn1O35350 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Capn1O35350 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.16■□□□□ 0.34
Capn1O35350 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.16■□□□□ 0.34
Capn1O35350 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Capn1O35350 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Capn1O35350 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms