Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Plac1-202ENSMUST00000114843 1201 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Col1a1P11087 Skint1-201ENSMUST00000117379 875 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
Col1a1P11087 Gm13680-201ENSMUST00000119790 793 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 Gm13466-201ENSMUST00000121515 999 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 Gm13828-201ENSMUST00000122278 363 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 AV064505-201ENSMUST00000124572 522 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Col1a1P11087 Gm16102-201ENSMUST00000160955 420 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 Skint1-203ENSMUST00000161389 960 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
Col1a1P11087 Gm8540-201ENSMUST00000168952 732 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 Obox4-ps36-201ENSMUST00000177206 723 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 Obox4-ps16-201ENSMUST00000177624 1137 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 Obox4-ps17-201ENSMUST00000178341 1137 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 Obox4-ps18-201ENSMUST00000179441 1137 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 Gm33370-201ENSMUST00000195935 489 ntTSL 2 BASIC9.28□□□□□ -0.92
Col1a1P11087 Ltf-209ENSMUST00000198884 616 ntTSL 5 BASIC9.28□□□□□ -0.92
Col1a1P11087 Olfr316-201ENSMUST00000203731 1011 ntAPPRIS P1 BASIC9.28□□□□□ -0.92
Col1a1P11087 1700094M24Rik-201ENSMUST00000203771 665 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Col1a1P11087 Gm44590-201ENSMUST00000206161 391 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 AC122539.1-201ENSMUST00000219925 329 ntBASIC9.28□□□□□ -0.92
Col1a1P11087 9930024M15Rik-201ENSMUST00000214902 2584 ntBASIC9.27□□□□□ -0.92
Col1a1P11087 Mamdc4-201ENSMUST00000095117 3990 ntAPPRIS P2 TSL 5 BASIC9.27□□□□□ -0.92
Col1a1P11087 Dnajb5-202ENSMUST00000084662 3302 ntAPPRIS P2 TSL 1 (best) BASIC9.27□□□□□ -0.92
Col1a1P11087 Aldoart1-202ENSMUST00000179234 2050 ntAPPRIS P1 BASIC9.27□□□□□ -0.92
Col1a1P11087 Ptprb-203ENSMUST00000218553 7016 ntAPPRIS ALT2 TSL 5 BASIC9.27□□□□□ -0.92
Col1a1P11087 Nrxn3-202ENSMUST00000110130 3654 ntTSL 2 BASIC9.27□□□□□ -0.93
Col1a1P11087 B020031H02Rik-201ENSMUST00000209977 3673 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 4933411E06Rik-201ENSMUST00000186016 1493 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Gm29555-201ENSMUST00000188620 1497 ntTSL 5 BASIC9.27□□□□□ -0.93
Col1a1P11087 Ankfn1-203ENSMUST00000169201 2232 ntTSL 2 BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm3278-201ENSMUST00000164459 1500 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
Col1a1P11087 Msh4-205ENSMUST00000190449 3110 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Lmx1a-202ENSMUST00000111377 3200 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
Col1a1P11087 A830010M20Rik-201ENSMUST00000060553 2439 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Nudt13-201ENSMUST00000022343 2494 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Inpp1-201ENSMUST00000027271 5767 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Arhgef9-210ENSMUST00000182001 4622 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm45194-202ENSMUST00000207962 1991 ntAPPRIS P5 TSL 5 BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm9776-201ENSMUST00000059598 2980 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 BC053393-201ENSMUST00000050937 2020 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm26574-201ENSMUST00000181876 2141 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Tvp23a-201ENSMUST00000051118 3315 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Pcdhb8-201ENSMUST00000051163 3334 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Col1a1P11087 Scrn3-201ENSMUST00000090811 3309 ntAPPRIS P2 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Synj2-209ENSMUST00000115790 4808 ntAPPRIS ALT2 TSL 5 BASIC9.27□□□□□ -0.93
Col1a1P11087 Slc7a2-202ENSMUST00000098816 3677 ntAPPRIS ALT1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm43544-201ENSMUST00000196474 2472 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Bdnf-206ENSMUST00000111046 3819 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm14509-201ENSMUST00000117312 1286 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Gm11263-201ENSMUST00000121853 749 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Gm24893-201ENSMUST00000122745 369 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Gm28053-201ENSMUST00000127537 350 ntAPPRIS P1 TSL 3 BASIC9.27□□□□□ -0.93
Col1a1P11087 1700073E17Rik-203ENSMUST00000148424 741 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Gm17057-201ENSMUST00000169887 591 ntTSL 3 BASIC9.27□□□□□ -0.93
Col1a1P11087 Stpg4-203ENSMUST00000187078 668 ntAPPRIS ALT2 TSL 3 BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm6472-202ENSMUST00000187973 582 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Gm38030-201ENSMUST00000192376 475 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Olfr706-201ENSMUST00000209025 1087 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Col1a1P11087 BC024386-202ENSMUST00000209496 851 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm5086-203ENSMUST00000210897 1136 ntTSL 5 BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm31763-203ENSMUST00000219739 1025 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 4932702P03Rik-203ENSMUST00000225028 670 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Olfr905-201ENSMUST00000051111 937 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Col1a1P11087 Krtap6-1-201ENSMUST00000076906 594 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Col1a1P11087 Gm26003-201ENSMUST00000083061 113 ntBASIC9.27□□□□□ -0.93
Col1a1P11087 Efcab12-201ENSMUST00000032468 2551 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
Col1a1P11087 Olfr1396-201ENSMUST00000060398 3946 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
Col1a1P11087 Il18bp-201ENSMUST00000094134 1311 ntAPPRIS P2 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Vmn1r86-204ENSMUST00000227700 5487 ntAPPRIS ALT2 BASIC9.27□□□□□ -0.93
Col1a1P11087 Ston1-207ENSMUST00000163588 2983 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Col1a1P11087 Apobec4-201ENSMUST00000068875 1566 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Gm8049-201ENSMUST00000214336 1782 ntBASIC9.26□□□□□ -0.93
Col1a1P11087 Gucy2d-203ENSMUST00000206435 3634 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
Col1a1P11087 4933424M12Rik-201ENSMUST00000132609 1944 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Pax9-201ENSMUST00000001538 4166 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Scn2a-205ENSMUST00000200829 6348 ntAPPRIS ALT1 TSL 5 BASIC9.26□□□□□ -0.93
Col1a1P11087 Omg-201ENSMUST00000164465 2228 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Gabra5-203ENSMUST00000206734 2224 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Ptchd4-201ENSMUST00000048691 6890 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
Col1a1P11087 Mlip-210ENSMUST00000184322 2668 ntTSL 5 BASIC9.26□□□□□ -0.93
Col1a1P11087 Rcbtb2-218ENSMUST00000169479 3351 ntAPPRIS P2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Slc25a35-201ENSMUST00000018884 3648 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Ctnnd1-218ENSMUST00000111692 6170 ntAPPRIS ALT1 TSL 5 BASIC9.26□□□□□ -0.93
Col1a1P11087 Lrrc18-203ENSMUST00000120866 1231 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Prkar2b-203ENSMUST00000146865 3133 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Sec23a-204ENSMUST00000165134 2529 ntTSL 5 BASIC9.26□□□□□ -0.93
Col1a1P11087 Gm26851-201ENSMUST00000181867 918 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Gucy1b3-204ENSMUST00000193597 3171 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Gm43219-201ENSMUST00000197972 1937 ntBASIC9.26□□□□□ -0.93
Col1a1P11087 Smco3-203ENSMUST00000203468 1791 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Gm45509-201ENSMUST00000209624 1229 ntBASIC9.26□□□□□ -0.93
Col1a1P11087 Olfr545-202ENSMUST00000216116 3496 ntAPPRIS P1 TSL 3 BASIC9.26□□□□□ -0.93
Col1a1P11087 Mrpl42-202ENSMUST00000217777 455 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 4933413J09Rik-201ENSMUST00000022427 899 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Tagap-201ENSMUST00000036370 3076 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Cd99l2-201ENSMUST00000037391 3600 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Sun3-201ENSMUST00000043377 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Olfr312-201ENSMUST00000078217 927 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
Col1a1P11087 Grxcr1-201ENSMUST00000094715 1071 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Col1a1P11087 Rnase6-201ENSMUST00000095923 1072 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms