Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
Cdk5rap3Q99LM2 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cdk5rap3Q99LM2 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cdk5rap3Q99LM2 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cdk5rap3Q99LM2 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Gm43173-201ENSMUST00000202246 593 ntBASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdk5rap3Q99LM2 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Gm27801-201ENSMUST00000184174 223 ntBASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Cdk5rap3Q99LM2 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Gm8493-201ENSMUST00000196881 489 ntBASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Cdk5rap3Q99LM2 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.36■□□□□ 0.69
Cdk5rap3Q99LM2 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cdk5rap3Q99LM2 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms