Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Gm14281-201ENSMUST00000121700 1294 ntBASIC21.01■□□□□ 0.95
Ushbp1Q8R370 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Rncr4-201ENSMUST00000194541 2234 ntBASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ushbp1Q8R370 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC21■□□□□ 0.95
Ushbp1Q8R370 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21■□□□□ 0.95
Ushbp1Q8R370 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ushbp1Q8R370 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ushbp1Q8R370 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ushbp1Q8R370 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ushbp1Q8R370 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Gm7514-201ENSMUST00000209475 934 ntBASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ushbp1Q8R370 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ushbp1Q8R370 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Nespas-201ENSMUST00000143738 1083 ntBASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ushbp1Q8R370 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ushbp1Q8R370 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms