Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.62■□□□□ 0.73
Trerf1Q8BXJ2 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trerf1Q8BXJ2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trerf1Q8BXJ2 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trerf1Q8BXJ2 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trerf1Q8BXJ2 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Trerf1Q8BXJ2 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trerf1Q8BXJ2 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trerf1Q8BXJ2 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trerf1Q8BXJ2 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trerf1Q8BXJ2 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trerf1Q8BXJ2 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trerf1Q8BXJ2 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trerf1Q8BXJ2 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trerf1Q8BXJ2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.58■□□□□ 0.73
Trerf1Q8BXJ2 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Trerf1Q8BXJ2 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trerf1Q8BXJ2 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trerf1Q8BXJ2 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trerf1Q8BXJ2 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC19.57■□□□□ 0.72
Trerf1Q8BXJ2 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trerf1Q8BXJ2 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trerf1Q8BXJ2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Trerf1Q8BXJ2 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.54■□□□□ 0.72
Trerf1Q8BXJ2 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trerf1Q8BXJ2 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trerf1Q8BXJ2 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trerf1Q8BXJ2 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trerf1Q8BXJ2 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trerf1Q8BXJ2 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms