Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm12527-201ENSMUST00000117967 564 ntBASIC18.28■□□□□ 0.52
Ubfd1Q78JW9 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC18.28■□□□□ 0.52
Ubfd1Q78JW9 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ubfd1Q78JW9 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Gm10653-202ENSMUST00000139570 835 ntBASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Gm20760-201ENSMUST00000179197 648 ntBASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Gm20049-201ENSMUST00000219950 730 ntBASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ubfd1Q78JW9 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ubfd1Q78JW9 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.27■□□□□ 0.51
Ubfd1Q78JW9 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Ubfd1Q78JW9 Golph3-202ENSMUST00000226517 2359 ntBASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Gm44672-201ENSMUST00000206944 1098 ntBASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ubfd1Q78JW9 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ubfd1Q78JW9 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ubfd1Q78JW9 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ubfd1Q78JW9 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ubfd1Q78JW9 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ubfd1Q78JW9 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms