Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Smarca1Q6PGB8 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smarca1Q6PGB8 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smarca1Q6PGB8 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smarca1Q6PGB8 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.87■□□□□ 0.93
Smarca1Q6PGB8 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Smarca1Q6PGB8 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Smarca1Q6PGB8 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Gm12933-201ENSMUST00000120203 872 ntBASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Gm38205-201ENSMUST00000192243 258 ntBASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Smarca1Q6PGB8 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.84■□□□□ 0.93
Smarca1Q6PGB8 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Smarca1Q6PGB8 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Smarca1Q6PGB8 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Smarca1Q6PGB8 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Smarca1Q6PGB8 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Smarca1Q6PGB8 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Smarca1Q6PGB8 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Smarca1Q6PGB8 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
Smarca1Q6PGB8 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Smarca1Q6PGB8 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Smarca1Q6PGB8 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
Smarca1Q6PGB8 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Smarca1Q6PGB8 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Smarca1Q6PGB8 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.81■□□□□ 0.92
Smarca1Q6PGB8 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Smarca1Q6PGB8 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Smarca1Q6PGB8 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Smarca1Q6PGB8 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.81■□□□□ 0.92
Smarca1Q6PGB8 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smarca1Q6PGB8 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smarca1Q6PGB8 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms