Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col28a1Q2UY11 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col28a1Q2UY11 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col28a1Q2UY11 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Col28a1Q2UY11 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col28a1Q2UY11 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col28a1Q2UY11 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col28a1Q2UY11 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col28a1Q2UY11 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col28a1Q2UY11 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col28a1Q2UY11 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col28a1Q2UY11 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col28a1Q2UY11 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col28a1Q2UY11 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col28a1Q2UY11 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Col28a1Q2UY11 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.14■□□□□ 0.49
Col28a1Q2UY11 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col28a1Q2UY11 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.14■□□□□ 0.49
Col28a1Q2UY11 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Gm29257-201ENSMUST00000186115 639 ntBASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col28a1Q2UY11 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col28a1Q2UY11 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col28a1Q2UY11 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col28a1Q2UY11 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col28a1Q2UY11 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
Col28a1Q2UY11 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.12■□□□□ 0.49
Col28a1Q2UY11 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Col28a1Q2UY11 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col28a1Q2UY11 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Gm8493-201ENSMUST00000196881 489 ntBASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col28a1Q2UY11 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 AC164629.5-201ENSMUST00000220387 632 ntBASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col28a1Q2UY11 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms