Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a1Q04857 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC20.7■□□□□ 0.9
Col6a1Q04857 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a1Q04857 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a1Q04857 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Col6a1Q04857 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a1Q04857 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.7■□□□□ 0.9
Col6a1Q04857 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a1Q04857 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a1Q04857 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a1Q04857 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a1Q04857 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Col6a1Q04857 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.69■□□□□ 0.9
Col6a1Q04857 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Col6a1Q04857 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Col6a1Q04857 Gm18666-201ENSMUST00000190039 958 ntBASIC20.69■□□□□ 0.9
Col6a1Q04857 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.69■□□□□ 0.9
Col6a1Q04857 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a1Q04857 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.68■□□□□ 0.9
Col6a1Q04857 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a1Q04857 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
Col6a1Q04857 Mir1199-201ENSMUST00000117015 119 ntBASIC20.68■□□□□ 0.9
Col6a1Q04857 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a1Q04857 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.68■□□□□ 0.9
Col6a1Q04857 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col6a1Q04857 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a1Q04857 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a1Q04857 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col6a1Q04857 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
Col6a1Q04857 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC20.67■□□□□ 0.9
Col6a1Q04857 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.67■□□□□ 0.9
Col6a1Q04857 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.67■□□□□ 0.9
Col6a1Q04857 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC20.67■□□□□ 0.9
Col6a1Q04857 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Col6a1Q04857 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.67■□□□□ 0.9
Col6a1Q04857 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col6a1Q04857 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Gm11249-201ENSMUST00000117071 859 ntBASIC20.66■□□□□ 0.9
Col6a1Q04857 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.66■□□□□ 0.9
Col6a1Q04857 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
Col6a1Q04857 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a1Q04857 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Col6a1Q04857 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Col6a1Q04857 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Col6a1Q04857 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.65■□□□□ 0.9
Col6a1Q04857 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Gm7860-201ENSMUST00000121190 879 ntBASIC20.65■□□□□ 0.9
Col6a1Q04857 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a1Q04857 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
Col6a1Q04857 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.65■□□□□ 0.9
Col6a1Q04857 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
Col6a1Q04857 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col6a1Q04857 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a1Q04857 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a1Q04857 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.64■□□□□ 0.89
Col6a1Q04857 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a1Q04857 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Col6a1Q04857 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
Col6a1Q04857 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a1Q04857 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a1Q04857 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a1Q04857 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a1Q04857 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms