Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh3P13705 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Msh3P13705 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh3P13705 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.74■□□□□ 0.91
Msh3P13705 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.74■□□□□ 0.91
Msh3P13705 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh3P13705 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh3P13705 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh3P13705 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh3P13705 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh3P13705 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh3P13705 Gm18284-201ENSMUST00000172604 624 ntBASIC20.73■□□□□ 0.91
Msh3P13705 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh3P13705 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Msh3P13705 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Msh3P13705 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.73■□□□□ 0.91
Msh3P13705 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh3P13705 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh3P13705 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Msh3P13705 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh3P13705 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh3P13705 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msh3P13705 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msh3P13705 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Msh3P13705 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msh3P13705 Gm10849-201ENSMUST00000100397 618 ntBASIC20.72■□□□□ 0.91
Msh3P13705 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msh3P13705 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
Msh3P13705 Gm5874-201ENSMUST00000096101 508 ntBASIC20.72■□□□□ 0.91
Msh3P13705 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msh3P13705 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msh3P13705 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Msh3P13705 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.72■□□□□ 0.91
Msh3P13705 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msh3P13705 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.71■□□□□ 0.91
Msh3P13705 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msh3P13705 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Msh3P13705 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.71■□□□□ 0.91
Msh3P13705 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Msh3P13705 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msh3P13705 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msh3P13705 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Msh3P13705 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Msh3P13705 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Msh3P13705 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Msh3P13705 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Msh3P13705 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.7■□□□□ 0.9
Msh3P13705 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.7■□□□□ 0.9
Msh3P13705 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.7■□□□□ 0.9
Msh3P13705 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Msh3P13705 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Msh3P13705 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.7■□□□□ 0.9
Msh3P13705 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Msh3P13705 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Msh3P13705 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Msh3P13705 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Msh3P13705 Gm42778-201ENSMUST00000199644 553 ntBASIC20.69■□□□□ 0.9
Msh3P13705 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Msh3P13705 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Msh3P13705 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
Msh3P13705 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.68■□□□□ 0.9
Msh3P13705 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Msh3P13705 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.68■□□□□ 0.9
Msh3P13705 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.68■□□□□ 0.9
Msh3P13705 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.67■□□□□ 0.9
Msh3P13705 Gm42642-201ENSMUST00000200683 355 ntBASIC20.67■□□□□ 0.9
Msh3P13705 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Msh3P13705 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.67■□□□□ 0.9
Msh3P13705 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Msh3P13705 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msh3P13705 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msh3P13705 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msh3P13705 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msh3P13705 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.66■□□□□ 0.9
Msh3P13705 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.66■□□□□ 0.9
Msh3P13705 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Msh3P13705 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Msh3P13705 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Msh3P13705 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Msh3P13705 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Msh3P13705 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Msh3P13705 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Msh3P13705 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms