Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col4a1P02463 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col4a1P02463 Gm11927-201ENSMUST00000118472 759 ntBASIC23.34■■□□□ 1.33
Col4a1P02463 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Col4a1P02463 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC23.34■■□□□ 1.33
Col4a1P02463 Gm37055-201ENSMUST00000191866 133 ntBASIC23.34■■□□□ 1.33
Col4a1P02463 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Col4a1P02463 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Col4a1P02463 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
Col4a1P02463 Krtap5-1-202ENSMUST00000188274 742 ntBASIC23.33■■□□□ 1.33
Col4a1P02463 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
Col4a1P02463 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Col4a1P02463 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Col4a1P02463 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Col4a1P02463 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Col4a1P02463 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC23.32■■□□□ 1.32
Col4a1P02463 Gm29994-201ENSMUST00000195495 1193 ntBASIC23.32■■□□□ 1.32
Col4a1P02463 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC23.32■■□□□ 1.32
Col4a1P02463 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC23.32■■□□□ 1.32
Col4a1P02463 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC23.32■■□□□ 1.32
Col4a1P02463 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC23.32■■□□□ 1.32
Col4a1P02463 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Col4a1P02463 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Col4a1P02463 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Col4a1P02463 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col4a1P02463 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col4a1P02463 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Col4a1P02463 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC23.31■■□□□ 1.32
Col4a1P02463 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC23.31■■□□□ 1.32
Col4a1P02463 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC23.31■■□□□ 1.32
Col4a1P02463 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
Col4a1P02463 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Col4a1P02463 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC23.31■■□□□ 1.32
Col4a1P02463 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col4a1P02463 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col4a1P02463 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Col4a1P02463 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Col4a1P02463 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col4a1P02463 AC126028.2-201ENSMUST00000228100 1833 ntBASIC23.3■■□□□ 1.32
Col4a1P02463 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col4a1P02463 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col4a1P02463 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Col4a1P02463 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Col4a1P02463 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
Col4a1P02463 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Col4a1P02463 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col4a1P02463 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col4a1P02463 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col4a1P02463 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Col4a1P02463 CT010444.2-201ENSMUST00000217877 1629 ntBASIC23.29■■□□□ 1.32
Col4a1P02463 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC23.28■■□□□ 1.32
Col4a1P02463 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Gm13158-201ENSMUST00000122007 736 ntBASIC23.28■■□□□ 1.32
Col4a1P02463 Gm6576-201ENSMUST00000169678 883 ntBASIC23.28■■□□□ 1.32
Col4a1P02463 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Col4a1P02463 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC23.28■■□□□ 1.32
Col4a1P02463 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Col4a1P02463 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC23.28■■□□□ 1.32
Col4a1P02463 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Col4a1P02463 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Col4a1P02463 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC23.27■■□□□ 1.32
Col4a1P02463 Mir1199-201ENSMUST00000117015 119 ntBASIC23.27■■□□□ 1.32
Col4a1P02463 Gm18666-201ENSMUST00000190039 958 ntBASIC23.27■■□□□ 1.32
Col4a1P02463 Arhgef33-211ENSMUST00000225658 473 ntBASIC23.27■■□□□ 1.32
Col4a1P02463 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Gm18688-201ENSMUST00000204695 1859 ntBASIC23.27■■□□□ 1.32
Col4a1P02463 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Col4a1P02463 Gm8309-201ENSMUST00000206627 1448 ntBASIC23.27■■□□□ 1.31
Col4a1P02463 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Col4a1P02463 Mir5122-201ENSMUST00000175004 89 ntBASIC23.26■■□□□ 1.31
Col4a1P02463 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Col4a1P02463 Gm7977-201ENSMUST00000193787 748 ntBASIC23.26■■□□□ 1.31
Col4a1P02463 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC23.26■■□□□ 1.31
Col4a1P02463 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Col4a1P02463 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col4a1P02463 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC23.26■■□□□ 1.31
Col4a1P02463 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col4a1P02463 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Col4a1P02463 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col4a1P02463 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Col4a1P02463 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Col4a1P02463 AC175538.1-201ENSMUST00000225343 1269 ntBASIC23.25■■□□□ 1.31
Col4a1P02463 Mtag2-201ENSMUST00000058665 714 ntBASIC23.25■■□□□ 1.31
Col4a1P02463 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Col4a1P02463 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms