Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.97■□□□□ 0.95
Pcdha4O88689 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
Pcdha4O88689 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.97■□□□□ 0.95
Pcdha4O88689 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Pcdha4O88689 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Pcdha4O88689 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.96■□□□□ 0.95
Pcdha4O88689 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
Pcdha4O88689 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC20.96■□□□□ 0.95
Pcdha4O88689 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Pcdha4O88689 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.96■□□□□ 0.95
Pcdha4O88689 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Pcdha4O88689 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
Pcdha4O88689 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pcdha4O88689 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Pcdha4O88689 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.94■□□□□ 0.94
Pcdha4O88689 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Pcdha4O88689 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Pcdha4O88689 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.94■□□□□ 0.94
Pcdha4O88689 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Pcdha4O88689 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Pcdha4O88689 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Pcdha4O88689 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Pcdha4O88689 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Pcdha4O88689 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Pcdha4O88689 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Pcdha4O88689 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Pcdha4O88689 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pcdha4O88689 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Pcdha4O88689 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Pcdha4O88689 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Pcdha4O88689 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Pcdha4O88689 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Pcdha4O88689 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Pcdha4O88689 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Pcdha4O88689 Mir5133-201ENSMUST00000174955 77 ntBASIC20.92■□□□□ 0.94
Pcdha4O88689 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.92■□□□□ 0.94
Pcdha4O88689 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Pcdha4O88689 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Pcdha4O88689 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
Pcdha4O88689 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Pcdha4O88689 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Pcdha4O88689 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Pcdha4O88689 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.91■□□□□ 0.94
Pcdha4O88689 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Pcdha4O88689 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Pcdha4O88689 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Pcdha4O88689 BC021767-201ENSMUST00000126387 1716 ntBASIC20.9■□□□□ 0.94
Pcdha4O88689 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms