Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Pcdh1F7BJK1 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Gm42922-201ENSMUST00000195887 2078 ntBASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Pcdh1F7BJK1 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Pcdh1F7BJK1 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdh1F7BJK1 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdh1F7BJK1 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Pcdh1F7BJK1 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC16.83■□□□□ 0.28
Pcdh1F7BJK1 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdh1F7BJK1 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdh1F7BJK1 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdh1F7BJK1 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdh1F7BJK1 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdh1F7BJK1 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Gm9207-201ENSMUST00000198773 1115 ntBASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC16.8■□□□□ 0.28
Pcdh1F7BJK1 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdh1F7BJK1 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms