Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Prpf40aQ9R1C7 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Prpf40aQ9R1C7 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Prpf40aQ9R1C7 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Prpf40aQ9R1C7 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Prpf40aQ9R1C7 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf40aQ9R1C7 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.64■□□□□ 0.89
Prpf40aQ9R1C7 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf40aQ9R1C7 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.64■□□□□ 0.89
Prpf40aQ9R1C7 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Prpf40aQ9R1C7 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Prpf40aQ9R1C7 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Prpf40aQ9R1C7 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Prpf40aQ9R1C7 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Gm18284-201ENSMUST00000172604 624 ntBASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Prpf40aQ9R1C7 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Gm9988-201ENSMUST00000069786 435 ntBASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Prpf40aQ9R1C7 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.59■□□□□ 0.89
Prpf40aQ9R1C7 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Prpf40aQ9R1C7 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms