Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Lima1Q9ERG0 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Lima1Q9ERG0 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.52■□□□□ 0.56
Lima1Q9ERG0 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Lima1Q9ERG0 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Lima1Q9ERG0 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Lima1Q9ERG0 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Lima1Q9ERG0 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.52■□□□□ 0.56
Lima1Q9ERG0 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Lima1Q9ERG0 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.52■□□□□ 0.56
Lima1Q9ERG0 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Lima1Q9ERG0 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Lima1Q9ERG0 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Lima1Q9ERG0 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Lima1Q9ERG0 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Lima1Q9ERG0 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Lima1Q9ERG0 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lima1Q9ERG0 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Gm43137-201ENSMUST00000198052 594 ntBASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lima1Q9ERG0 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lima1Q9ERG0 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Lima1Q9ERG0 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Lima1Q9ERG0 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
Lima1Q9ERG0 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.49■□□□□ 0.55
Lima1Q9ERG0 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
Lima1Q9ERG0 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lima1Q9ERG0 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lima1Q9ERG0 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Lima1Q9ERG0 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lima1Q9ERG0 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms