Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-4Q9EQM3 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-4Q9EQM3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-4Q9EQM3 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-4Q9EQM3 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 Gm30025-201ENSMUST00000218555 728 ntBASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nkx2-4Q9EQM3 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-4Q9EQM3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-4Q9EQM3 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nkx2-4Q9EQM3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-4Q9EQM3 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Gm11927-201ENSMUST00000118472 759 ntBASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Nkx2-4Q9EQM3 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Gm27741-201ENSMUST00000185060 237 ntBASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-4Q9EQM3 Flg-201ENSMUST00000050758 1488 ntBASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Gm6659-201ENSMUST00000174752 547 ntBASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Nkx2-4Q9EQM3 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms