Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdc40Q9DC48 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdc40Q9DC48 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Cdc40Q9DC48 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Gm7514-201ENSMUST00000209475 934 ntBASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdc40Q9DC48 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Cdc40Q9DC48 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
Cdc40Q9DC48 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Ap3s1-204ENSMUST00000225520 957 ntBASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdc40Q9DC48 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdc40Q9DC48 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdc40Q9DC48 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdc40Q9DC48 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms