Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Ddx56Q9D0R4 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC19.76■□□□□ 0.75
Ddx56Q9D0R4 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Gm10493-201ENSMUST00000097270 612 ntBASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx56Q9D0R4 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Gm13146-201ENSMUST00000118508 780 ntBASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
Ddx56Q9D0R4 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx56Q9D0R4 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Gm13234-201ENSMUST00000120010 747 ntBASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx56Q9D0R4 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx56Q9D0R4 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms