Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Gm26571-201ENSMUST00000181399 666 ntBASIC18.27■□□□□ 0.52
Msh4Q99MT2 Gm42778-201ENSMUST00000199644 553 ntBASIC18.27■□□□□ 0.52
Msh4Q99MT2 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Msh4Q99MT2 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Msh4Q99MT2 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Msh4Q99MT2 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Msh4Q99MT2 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.26■□□□□ 0.51
Msh4Q99MT2 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.26■□□□□ 0.51
Msh4Q99MT2 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Msh4Q99MT2 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Msh4Q99MT2 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Msh4Q99MT2 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Msh4Q99MT2 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Msh4Q99MT2 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Msh4Q99MT2 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Msh4Q99MT2 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.25■□□□□ 0.51
Msh4Q99MT2 Gm18671-201ENSMUST00000214826 683 ntBASIC18.25■□□□□ 0.51
Msh4Q99MT2 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Msh4Q99MT2 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.25■□□□□ 0.51
Msh4Q99MT2 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Gm42569-201ENSMUST00000200539 472 ntBASIC18.24■□□□□ 0.51
Msh4Q99MT2 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Msh4Q99MT2 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Msh4Q99MT2 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.23■□□□□ 0.51
Msh4Q99MT2 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Gm10033-202ENSMUST00000211874 928 ntBASIC18.23■□□□□ 0.51
Msh4Q99MT2 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Msh4Q99MT2 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.22■□□□□ 0.51
Msh4Q99MT2 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
Msh4Q99MT2 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh4Q99MT2 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh4Q99MT2 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh4Q99MT2 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Msh4Q99MT2 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms