Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdk5rap3Q99LM2 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdk5rap3Q99LM2 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Cdk5rap3Q99LM2 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdk5rap3Q99LM2 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdk5rap3Q99LM2 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdk5rap3Q99LM2 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdk5rap3Q99LM2 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Smad6-203ENSMUST00000179458 273 ntBASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdk5rap3Q99LM2 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Gm11421-201ENSMUST00000122124 294 ntBASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdk5rap3Q99LM2 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Mir7075-201ENSMUST00000184187 82 ntBASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdk5rap3Q99LM2 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdk5rap3Q99LM2 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Gm7860-201ENSMUST00000121190 879 ntBASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cdk5rap3Q99LM2 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdk5rap3Q99LM2 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms