Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp11Q99K46 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp11Q99K46 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Usp11Q99K46 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC19.75■□□□□ 0.75
Usp11Q99K46 AC154266.1-201ENSMUST00000223190 503 ntBASIC19.75■□□□□ 0.75
Usp11Q99K46 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Usp11Q99K46 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp11Q99K46 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp11Q99K46 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Usp11Q99K46 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp11Q99K46 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Usp11Q99K46 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp11Q99K46 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp11Q99K46 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp11Q99K46 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Usp11Q99K46 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.74■□□□□ 0.75
Usp11Q99K46 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp11Q99K46 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp11Q99K46 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Usp11Q99K46 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Usp11Q99K46 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC19.73■□□□□ 0.75
Usp11Q99K46 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Usp11Q99K46 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Usp11Q99K46 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp11Q99K46 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Usp11Q99K46 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Usp11Q99K46 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.72■□□□□ 0.75
Usp11Q99K46 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.72■□□□□ 0.75
Usp11Q99K46 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Usp11Q99K46 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.72■□□□□ 0.75
Usp11Q99K46 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp11Q99K46 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Usp11Q99K46 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.71■□□□□ 0.75
Usp11Q99K46 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
Usp11Q99K46 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Usp11Q99K46 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp11Q99K46 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp11Q99K46 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp11Q99K46 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
Usp11Q99K46 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC19.7■□□□□ 0.74
Usp11Q99K46 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp11Q99K46 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp11Q99K46 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Usp11Q99K46 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp11Q99K46 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.7■□□□□ 0.74
Usp11Q99K46 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Usp11Q99K46 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp11Q99K46 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp11Q99K46 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Usp11Q99K46 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.69■□□□□ 0.74
Usp11Q99K46 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.69■□□□□ 0.74
Usp11Q99K46 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Usp11Q99K46 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.69■□□□□ 0.74
Usp11Q99K46 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Usp11Q99K46 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Usp11Q99K46 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp11Q99K46 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp11Q99K46 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp11Q99K46 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms