Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim47Q8C0E3 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim47Q8C0E3 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 CT025689.6-201ENSMUST00000224991 1104 ntBASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.88■□□□□ 0.93
Trim47Q8C0E3 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Gm7290-201ENSMUST00000104990 617 ntBASIC20.87■□□□□ 0.93
Trim47Q8C0E3 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Gm12918-201ENSMUST00000120234 636 ntBASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Gm15710-201ENSMUST00000121821 636 ntBASIC20.87■□□□□ 0.93
Trim47Q8C0E3 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Gm5075-201ENSMUST00000196916 622 ntBASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim47Q8C0E3 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim47Q8C0E3 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim47Q8C0E3 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
Trim47Q8C0E3 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.83■□□□□ 0.93
Trim47Q8C0E3 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Trim47Q8C0E3 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim47Q8C0E3 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim47Q8C0E3 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim47Q8C0E3 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim47Q8C0E3 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim47Q8C0E3 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim47Q8C0E3 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim47Q8C0E3 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim47Q8C0E3 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim47Q8C0E3 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim47Q8C0E3 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Trim47Q8C0E3 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.82■□□□□ 0.92
Trim47Q8C0E3 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.82■□□□□ 0.92
Trim47Q8C0E3 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim47Q8C0E3 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms