Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC22.13■■□□□ 1.13
Limch1Q3UH68 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC22.13■■□□□ 1.13
Limch1Q3UH68 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Gm14281-201ENSMUST00000121700 1294 ntBASIC22.12■■□□□ 1.13
Limch1Q3UH68 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Gm5540-201ENSMUST00000131852 1848 ntBASIC22.12■■□□□ 1.13
Limch1Q3UH68 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Limch1Q3UH68 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Limch1Q3UH68 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC22.11■■□□□ 1.13
Limch1Q3UH68 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Limch1Q3UH68 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC22.11■■□□□ 1.13
Limch1Q3UH68 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Limch1Q3UH68 Gm5112-201ENSMUST00000204407 2368 ntBASIC22.1■■□□□ 1.13
Limch1Q3UH68 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Limch1Q3UH68 Gm27801-201ENSMUST00000184174 223 ntBASIC22.1■■□□□ 1.13
Limch1Q3UH68 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC22.1■■□□□ 1.13
Limch1Q3UH68 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Limch1Q3UH68 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Limch1Q3UH68 Gm10602-201ENSMUST00000098239 609 ntBASIC22.1■■□□□ 1.13
Limch1Q3UH68 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC22.1■■□□□ 1.13
Limch1Q3UH68 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Limch1Q3UH68 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Limch1Q3UH68 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Limch1Q3UH68 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Limch1Q3UH68 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Limch1Q3UH68 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Limch1Q3UH68 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Limch1Q3UH68 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.12
Limch1Q3UH68 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Rncr4-201ENSMUST00000194541 2234 ntBASIC22.07■■□□□ 1.12
Limch1Q3UH68 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Gm12933-201ENSMUST00000120203 872 ntBASIC22.07■■□□□ 1.12
Limch1Q3UH68 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Limch1Q3UH68 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Gm13234-201ENSMUST00000120010 747 ntBASIC22.06■■□□□ 1.12
Limch1Q3UH68 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 CT030146.1-201ENSMUST00000220919 217 ntBASIC22.06■■□□□ 1.12
Limch1Q3UH68 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Limch1Q3UH68 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Limch1Q3UH68 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Limch1Q3UH68 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Limch1Q3UH68 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Limch1Q3UH68 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC22.05■■□□□ 1.12
Limch1Q3UH68 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Limch1Q3UH68 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms