Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdh11P55288 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cdh11P55288 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdh11P55288 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdh11P55288 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdh11P55288 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdh11P55288 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdh11P55288 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdh11P55288 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdh11P55288 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC17.08■□□□□ 0.33
Cdh11P55288 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdh11P55288 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdh11P55288 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdh11P55288 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdh11P55288 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cdh11P55288 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Cdh11P55288 Gm27045-201ENSMUST00000182145 1402 ntBASIC17.08■□□□□ 0.32
Cdh11P55288 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdh11P55288 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Cdh11P55288 Gm40848-201ENSMUST00000221998 324 ntBASIC17.08■□□□□ 0.32
Cdh11P55288 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC17.08■□□□□ 0.32
Cdh11P55288 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.08■□□□□ 0.32
Cdh11P55288 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdh11P55288 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdh11P55288 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Cdh11P55288 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Cdh11P55288 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Cdh11P55288 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Cdh11P55288 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.07■□□□□ 0.32
Cdh11P55288 Gm43060-201ENSMUST00000200621 289 ntBASIC17.07■□□□□ 0.32
Cdh11P55288 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Cdh11P55288 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdh11P55288 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC17.06■□□□□ 0.32
Cdh11P55288 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Cdh11P55288 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC17.06■□□□□ 0.32
Cdh11P55288 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Gm5874-201ENSMUST00000096101 508 ntBASIC17.06■□□□□ 0.32
Cdh11P55288 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.06■□□□□ 0.32
Cdh11P55288 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Cdh11P55288 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC17.06■□□□□ 0.32
Cdh11P55288 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdh11P55288 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cdh11P55288 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.05■□□□□ 0.32
Cdh11P55288 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdh11P55288 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.05■□□□□ 0.32
Cdh11P55288 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Cdh11P55288 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Cdh11P55288 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdh11P55288 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdh11P55288 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Cdh11P55288 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdh11P55288 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC17.05■□□□□ 0.32
Cdh11P55288 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Cdh11P55288 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.04■□□□□ 0.32
Cdh11P55288 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC17.04■□□□□ 0.32
Cdh11P55288 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Cdh11P55288 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.04■□□□□ 0.32
Cdh11P55288 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.04■□□□□ 0.32
Cdh11P55288 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Cdh11P55288 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Cdh11P55288 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 66.9 ms