Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Msh4Q99MT2 AA386476-201ENSMUST00000098781 1665 ntBASIC18.35■□□□□ 0.53
Msh4Q99MT2 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.35■□□□□ 0.53
Msh4Q99MT2 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Msh4Q99MT2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msh4Q99MT2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.34■□□□□ 0.53
Msh4Q99MT2 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.34■□□□□ 0.53
Msh4Q99MT2 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Msh4Q99MT2 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh4Q99MT2 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh4Q99MT2 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Msh4Q99MT2 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh4Q99MT2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.33■□□□□ 0.52
Msh4Q99MT2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msh4Q99MT2 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msh4Q99MT2 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msh4Q99MT2 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Msh4Q99MT2 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC18.32■□□□□ 0.52
Msh4Q99MT2 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
Msh4Q99MT2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msh4Q99MT2 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Msh4Q99MT2 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Msh4Q99MT2 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh4Q99MT2 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Msh4Q99MT2 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh4Q99MT2 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.31■□□□□ 0.52
Msh4Q99MT2 Gm42642-201ENSMUST00000200683 355 ntBASIC18.31■□□□□ 0.52
Msh4Q99MT2 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.31■□□□□ 0.52
Msh4Q99MT2 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Msh4Q99MT2 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msh4Q99MT2 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.3■□□□□ 0.52
Msh4Q99MT2 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.3■□□□□ 0.52
Msh4Q99MT2 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msh4Q99MT2 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Gm9988-201ENSMUST00000069786 435 ntBASIC18.29■□□□□ 0.52
Msh4Q99MT2 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Msh4Q99MT2 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.28■□□□□ 0.52
Msh4Q99MT2 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.28■□□□□ 0.52
Msh4Q99MT2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms