Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim9Q8C7M3 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim9Q8C7M3 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.91■□□□□ 0.94
Trim9Q8C7M3 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.91■□□□□ 0.94
Trim9Q8C7M3 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim9Q8C7M3 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim9Q8C7M3 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim9Q8C7M3 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim9Q8C7M3 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Trim9Q8C7M3 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Trim9Q8C7M3 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim9Q8C7M3 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Trim9Q8C7M3 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim9Q8C7M3 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim9Q8C7M3 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim9Q8C7M3 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Reep4-203ENSMUST00000226563 1444 ntBASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Gm9988-201ENSMUST00000069786 435 ntBASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim9Q8C7M3 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim9Q8C7M3 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim9Q8C7M3 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim9Q8C7M3 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Trim9Q8C7M3 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.84■□□□□ 0.93
Trim9Q8C7M3 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.84■□□□□ 0.93
Trim9Q8C7M3 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim9Q8C7M3 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms