Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a6Q8C6K9 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.08■□□□□ 0.33
Col6a6Q8C6K9 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a6Q8C6K9 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a6Q8C6K9 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a6Q8C6K9 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 AC152827.1-201ENSMUST00000221143 2189 ntBASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a6Q8C6K9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a6Q8C6K9 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a6Q8C6K9 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Gm2399-201ENSMUST00000104944 225 ntBASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a6Q8C6K9 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Gm43799-201ENSMUST00000201845 579 ntBASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Gm10819-201ENSMUST00000099988 561 ntBASIC17.03■□□□□ 0.32
Col6a6Q8C6K9 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms