Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Usp47Q8BY87 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Usp47Q8BY87 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Usp47Q8BY87 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC26.86■■□□□ 1.89
Usp47Q8BY87 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC26.86■■□□□ 1.89
Usp47Q8BY87 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp47Q8BY87 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp47Q8BY87 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp47Q8BY87 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp47Q8BY87 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp47Q8BY87 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp47Q8BY87 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Usp47Q8BY87 Gm37563-201ENSMUST00000192580 1513 ntBASIC26.85■■□□□ 1.89
Usp47Q8BY87 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC26.85■■□□□ 1.89
Usp47Q8BY87 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC26.84■■□□□ 1.89
Usp47Q8BY87 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Usp47Q8BY87 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Usp47Q8BY87 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Usp47Q8BY87 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Usp47Q8BY87 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Usp47Q8BY87 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Usp47Q8BY87 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
Usp47Q8BY87 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
Usp47Q8BY87 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC26.83■■□□□ 1.89
Usp47Q8BY87 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Usp47Q8BY87 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC26.83■■□□□ 1.89
Usp47Q8BY87 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Usp47Q8BY87 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Usp47Q8BY87 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Usp47Q8BY87 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Usp47Q8BY87 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Usp47Q8BY87 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC26.83■■□□□ 1.88
Usp47Q8BY87 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
Usp47Q8BY87 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Usp47Q8BY87 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Usp47Q8BY87 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Usp47Q8BY87 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Usp47Q8BY87 Gm27011-201ENSMUST00000182352 972 ntBASIC26.82■■□□□ 1.88
Usp47Q8BY87 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC26.82■■□□□ 1.88
Usp47Q8BY87 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC26.82■■□□□ 1.88
Usp47Q8BY87 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp47Q8BY87 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC26.81■■□□□ 1.88
Usp47Q8BY87 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp47Q8BY87 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp47Q8BY87 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp47Q8BY87 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC26.81■■□□□ 1.88
Usp47Q8BY87 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC26.81■■□□□ 1.88
Usp47Q8BY87 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Usp47Q8BY87 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Usp47Q8BY87 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Usp47Q8BY87 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Usp47Q8BY87 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
Usp47Q8BY87 Gm12669-201ENSMUST00000122162 1009 ntBASIC26.8■■□□□ 1.88
Usp47Q8BY87 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
Usp47Q8BY87 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC26.8■■□□□ 1.88
Usp47Q8BY87 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Usp47Q8BY87 AC122769.4-201ENSMUST00000228166 901 ntBASIC26.8■■□□□ 1.88
Usp47Q8BY87 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
Usp47Q8BY87 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Usp47Q8BY87 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Usp47Q8BY87 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Usp47Q8BY87 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Usp47Q8BY87 Gm43672-201ENSMUST00000199072 1731 ntBASIC26.78■■□□□ 1.88
Usp47Q8BY87 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC26.78■■□□□ 1.88
Usp47Q8BY87 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Usp47Q8BY87 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC26.78■■□□□ 1.88
Usp47Q8BY87 Gm5408-201ENSMUST00000197998 747 ntBASIC26.78■■□□□ 1.88
Usp47Q8BY87 Gm13509-201ENSMUST00000119733 1308 ntBASIC26.78■■□□□ 1.88
Usp47Q8BY87 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Usp47Q8BY87 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Usp47Q8BY87 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC26.77■■□□□ 1.88
Usp47Q8BY87 Gm12441-201ENSMUST00000121806 588 ntBASIC26.77■■□□□ 1.88
Usp47Q8BY87 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
Usp47Q8BY87 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Usp47Q8BY87 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Usp47Q8BY87 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Usp47Q8BY87 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Usp47Q8BY87 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Usp47Q8BY87 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Usp47Q8BY87 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Usp47Q8BY87 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.87
Usp47Q8BY87 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Usp47Q8BY87 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC26.75■■□□□ 1.87
Usp47Q8BY87 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Notumos-201ENSMUST00000151998 2659 ntBASIC26.75■■□□□ 1.87
Usp47Q8BY87 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC26.75■■□□□ 1.87
Usp47Q8BY87 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Usp47Q8BY87 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC26.74■■□□□ 1.87
Usp47Q8BY87 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Usp47Q8BY87 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Usp47Q8BY87 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC26.74■■□□□ 1.87
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms