Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf40Q3U319 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf40Q3U319 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf40Q3U319 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.56■□□□□ 0.72
Rnf40Q3U319 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf40Q3U319 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.56■□□□□ 0.72
Rnf40Q3U319 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Gm7332-201ENSMUST00000118351 454 ntBASIC19.55■□□□□ 0.72
Rnf40Q3U319 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf40Q3U319 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf40Q3U319 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.54■□□□□ 0.72
Rnf40Q3U319 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Cap2-205ENSMUST00000225824 1634 ntBASIC19.54■□□□□ 0.72
Rnf40Q3U319 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf40Q3U319 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf40Q3U319 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Rnf40Q3U319 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rnf40Q3U319 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.52■□□□□ 0.72
Rnf40Q3U319 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Rnf40Q3U319 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Rnf40Q3U319 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Rnf40Q3U319 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Rnf40Q3U319 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Rnf40Q3U319 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Rnf40Q3U319 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rnf40Q3U319 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.5■□□□□ 0.71
Rnf40Q3U319 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rnf40Q3U319 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms