Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col28a1Q2UY11 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col28a1Q2UY11 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col28a1Q2UY11 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col28a1Q2UY11 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Col28a1Q2UY11 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Col28a1Q2UY11 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col28a1Q2UY11 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.27■□□□□ 0.51
Col28a1Q2UY11 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.26■□□□□ 0.51
Col28a1Q2UY11 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col28a1Q2UY11 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col28a1Q2UY11 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Gm43137-201ENSMUST00000198052 594 ntBASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 94.7 ms