Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Chmp6P0C0A3 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Chmp6P0C0A3 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Chmp6P0C0A3 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Gm42642-201ENSMUST00000200683 355 ntBASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Chmp6P0C0A3 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Chmp6P0C0A3 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp6P0C0A3 Reep4-203ENSMUST00000226563 1444 ntBASIC20.46■□□□□ 0.87
Chmp6P0C0A3 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Chmp6P0C0A3 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
Chmp6P0C0A3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Chmp6P0C0A3 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.46■□□□□ 0.87
Chmp6P0C0A3 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Chmp6P0C0A3 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
Chmp6P0C0A3 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp6P0C0A3 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Chmp6P0C0A3 Gm18671-201ENSMUST00000214826 683 ntBASIC20.44■□□□□ 0.86
Chmp6P0C0A3 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.44■□□□□ 0.86
Chmp6P0C0A3 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp6P0C0A3 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.44■□□□□ 0.86
Chmp6P0C0A3 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp6P0C0A3 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp6P0C0A3 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp6P0C0A3 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp6P0C0A3 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Chmp6P0C0A3 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp6P0C0A3 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp6P0C0A3 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp6P0C0A3 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp6P0C0A3 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp6P0C0A3 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp6P0C0A3 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp6P0C0A3 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms