Protein–RNA interactions for Protein: Q9EQH3

Vps35, Vacuolar protein sorting-associated protein 35, mousemouse

Known RBP Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps35Q9EQH3 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps35Q9EQH3 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Vps35Q9EQH3 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps35Q9EQH3 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.91■□□□□ 0.62
Vps35Q9EQH3 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps35Q9EQH3 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Gm9988-201ENSMUST00000069786 435 ntBASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps35Q9EQH3 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.89■□□□□ 0.62
Vps35Q9EQH3 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Vps35Q9EQH3 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Vps35Q9EQH3 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Vps35Q9EQH3 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Vps35Q9EQH3 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps35Q9EQH3 Reep4-203ENSMUST00000226563 1444 ntBASIC18.85■□□□□ 0.61
Vps35Q9EQH3 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps35Q9EQH3 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps35Q9EQH3 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps35Q9EQH3 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps35Q9EQH3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vps35Q9EQH3 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Vps35Q9EQH3 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps35Q9EQH3 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps35Q9EQH3 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Vps35Q9EQH3 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps35Q9EQH3 Gm13234-201ENSMUST00000120010 747 ntBASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms