Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim9Q8C7M3 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim9Q8C7M3 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim9Q8C7M3 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Trim9Q8C7M3 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Gm38205-201ENSMUST00000192243 258 ntBASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Trim9Q8C7M3 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim9Q8C7M3 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim9Q8C7M3 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim9Q8C7M3 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.95■□□□□ 0.94
Trim9Q8C7M3 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Trim9Q8C7M3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim9Q8C7M3 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim9Q8C7M3 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim9Q8C7M3 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim9Q8C7M3 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim9Q8C7M3 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim9Q8C7M3 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Trim9Q8C7M3 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim9Q8C7M3 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms