Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Gm40848-201ENSMUST00000221998 324 ntBASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Gm26833-201ENSMUST00000180899 440 ntBASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 AC124603.1-201ENSMUST00000223843 308 ntBASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Trav5d-4Q5R1F6 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC16.27■□□□□ 0.19
Trav5d-4Q5R1F6 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav5d-4Q5R1F6 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav5d-4Q5R1F6 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trav5d-4Q5R1F6 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Gm38342-201ENSMUST00000195710 2980 ntBASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Trav5d-4Q5R1F6 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Gm27801-201ENSMUST00000184174 223 ntBASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav5d-4Q5R1F6 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Rncr4-201ENSMUST00000194541 2234 ntBASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav5d-4Q5R1F6 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms