Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 AC130671.1-201ENSMUST00000227384 1237 ntBASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Ccdc88bQ4QRL3 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Ccdc88bQ4QRL3 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Ccdc88bQ4QRL3 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC31.26■■■□□ 2.59
Ccdc88bQ4QRL3 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Ccdc88bQ4QRL3 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ccdc88bQ4QRL3 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ccdc88bQ4QRL3 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Ccdc88bQ4QRL3 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ccdc88bQ4QRL3 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
Ccdc88bQ4QRL3 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ccdc88bQ4QRL3 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Ccdc88bQ4QRL3 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC31.24■■■□□ 2.59
Ccdc88bQ4QRL3 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
Ccdc88bQ4QRL3 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
Ccdc88bQ4QRL3 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Ccdc88bQ4QRL3 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Ccdc88bQ4QRL3 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Gm19094-201ENSMUST00000209791 1246 ntBASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Gm5540-201ENSMUST00000131852 1848 ntBASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Ccdc88bQ4QRL3 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Ccdc88bQ4QRL3 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Ccdc88bQ4QRL3 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC31.22■■■□□ 2.59
Ccdc88bQ4QRL3 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Ccdc88bQ4QRL3 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Ccdc88bQ4QRL3 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
Ccdc88bQ4QRL3 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Ccdc88bQ4QRL3 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
Ccdc88bQ4QRL3 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Ccdc88bQ4QRL3 Gm12896-201ENSMUST00000118430 226 ntBASIC31.21■■■□□ 2.59
Ccdc88bQ4QRL3 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Ccdc88bQ4QRL3 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.59
Ccdc88bQ4QRL3 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Ccdc88bQ4QRL3 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ccdc88bQ4QRL3 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ccdc88bQ4QRL3 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ccdc88bQ4QRL3 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ccdc88bQ4QRL3 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
Ccdc88bQ4QRL3 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ccdc88bQ4QRL3 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC31.18■■■□□ 2.58
Ccdc88bQ4QRL3 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Ccdc88bQ4QRL3 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Ccdc88bQ4QRL3 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Ccdc88bQ4QRL3 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Ccdc88bQ4QRL3 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC31.18■■■□□ 2.58
Ccdc88bQ4QRL3 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Ccdc88bQ4QRL3 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Ccdc88bQ4QRL3 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Ccdc88bQ4QRL3 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Ccdc88bQ4QRL3 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Ccdc88bQ4QRL3 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Dio3-201ENSMUST00000097228 1449 ntBASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ccdc88bQ4QRL3 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Ccdc88bQ4QRL3 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC31.15■■■□□ 2.58
Ccdc88bQ4QRL3 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC31.15■■■□□ 2.58
Ccdc88bQ4QRL3 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
Ccdc88bQ4QRL3 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
Ccdc88bQ4QRL3 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Ccdc88bQ4QRL3 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Ccdc88bQ4QRL3 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Ccdc88bQ4QRL3 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Ccdc88bQ4QRL3 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Ccdc88bQ4QRL3 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms