Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Limch1Q3UH68 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
Limch1Q3UH68 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Limch1Q3UH68 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Limch1Q3UH68 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC22.28■■□□□ 1.16
Limch1Q3UH68 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Limch1Q3UH68 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
Limch1Q3UH68 Gm18688-201ENSMUST00000204695 1859 ntBASIC22.28■■□□□ 1.16
Limch1Q3UH68 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Limch1Q3UH68 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Limch1Q3UH68 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
Limch1Q3UH68 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Limch1Q3UH68 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Limch1Q3UH68 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Limch1Q3UH68 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Limch1Q3UH68 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Limch1Q3UH68 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Limch1Q3UH68 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Limch1Q3UH68 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Limch1Q3UH68 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Limch1Q3UH68 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Limch1Q3UH68 AC137127.1-201ENSMUST00000213466 1078 ntBASIC22.23■■□□□ 1.15
Limch1Q3UH68 CT025689.6-201ENSMUST00000224991 1104 ntBASIC22.23■■□□□ 1.15
Limch1Q3UH68 AC112142.1-201ENSMUST00000228796 918 ntBASIC22.23■■□□□ 1.15
Limch1Q3UH68 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Limch1Q3UH68 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Limch1Q3UH68 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Limch1Q3UH68 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Limch1Q3UH68 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Golph3-205ENSMUST00000228671 2842 ntBASIC22.22■■□□□ 1.15
Limch1Q3UH68 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Limch1Q3UH68 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC22.21■■□□□ 1.15
Limch1Q3UH68 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Limch1Q3UH68 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC22.21■■□□□ 1.15
Limch1Q3UH68 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 1052.1 ms