Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shmt1P50431 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shmt1P50431 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Shmt1P50431 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Shmt1P50431 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 Gm6420-201ENSMUST00000193885 723 ntBASIC20.11■□□□□ 0.81
Shmt1P50431 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Shmt1P50431 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
Shmt1P50431 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.11■□□□□ 0.81
Shmt1P50431 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Shmt1P50431 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shmt1P50431 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shmt1P50431 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Shmt1P50431 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Shmt1P50431 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Shmt1P50431 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shmt1P50431 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Shmt1P50431 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Shmt1P50431 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Shmt1P50431 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Shmt1P50431 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shmt1P50431 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shmt1P50431 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shmt1P50431 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Shmt1P50431 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shmt1P50431 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Shmt1P50431 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shmt1P50431 Nespas-201ENSMUST00000143738 1083 ntBASIC20.08■□□□□ 0.81
Shmt1P50431 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.08■□□□□ 0.81
Shmt1P50431 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Shmt1P50431 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shmt1P50431 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Shmt1P50431 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Shmt1P50431 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Shmt1P50431 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.08■□□□□ 0.8
Shmt1P50431 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shmt1P50431 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.07■□□□□ 0.8
Shmt1P50431 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Shmt1P50431 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shmt1P50431 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shmt1P50431 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shmt1P50431 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Shmt1P50431 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shmt1P50431 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.06■□□□□ 0.8
Shmt1P50431 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shmt1P50431 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shmt1P50431 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Shmt1P50431 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.06■□□□□ 0.8
Shmt1P50431 CT025689.6-201ENSMUST00000224991 1104 ntBASIC20.06■□□□□ 0.8
Shmt1P50431 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shmt1P50431 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shmt1P50431 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.06■□□□□ 0.8
Shmt1P50431 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Shmt1P50431 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shmt1P50431 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shmt1P50431 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.05■□□□□ 0.8
Shmt1P50431 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.05■□□□□ 0.8
Shmt1P50431 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shmt1P50431 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shmt1P50431 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shmt1P50431 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shmt1P50431 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shmt1P50431 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Shmt1P50431 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.04■□□□□ 0.8
Shmt1P50431 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Shmt1P50431 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shmt1P50431 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shmt1P50431 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Shmt1P50431 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Shmt1P50431 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.03■□□□□ 0.8
Shmt1P50431 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Shmt1P50431 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC20.03■□□□□ 0.8
Shmt1P50431 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.03■□□□□ 0.8
Shmt1P50431 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Shmt1P50431 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shmt1P50431 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Shmt1P50431 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Shmt1P50431 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.02■□□□□ 0.8
Shmt1P50431 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shmt1P50431 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shmt1P50431 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shmt1P50431 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms