Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Pcdhgb8A0A140LI48 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Pcdhgb8A0A140LI48 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Pcdhgb8A0A140LI48 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Spcs1-204ENSMUST00000226782 949 ntBASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Pcdhgb8A0A140LI48 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Pcdhgb8A0A140LI48 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
Pcdhgb8A0A140LI48 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Pcdhgb8A0A140LI48 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Pcdhgb8A0A140LI48 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Pcdhgb8A0A140LI48 Gm43173-201ENSMUST00000202246 593 ntBASIC17.02■□□□□ 0.32
Pcdhgb8A0A140LI48 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Pcdhgb8A0A140LI48 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Pcdhgb8A0A140LI48 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Pcdhgb8A0A140LI48 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Pcdhgb8A0A140LI48 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Pcdhgb8A0A140LI48 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
Pcdhgb8A0A140LI48 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Pcdhgb8A0A140LI48 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Pcdhgb8A0A140LI48 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17■□□□□ 0.31
Pcdhgb8A0A140LI48 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Pcdhgb8A0A140LI48 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Pcdhgb8A0A140LI48 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms