Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Rarb-207ENSMUST00000225921 2756 ntBASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Gm6627-201ENSMUST00000218299 2386 ntBASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC13.03□□□□□ -0.32
Trav11A0A0B4J1J9 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Trav11A0A0B4J1J9 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Fam105a-203ENSMUST00000226170 3043 ntBASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav11A0A0B4J1J9 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 BC021767-201ENSMUST00000126387 1716 ntBASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Gm18688-201ENSMUST00000204695 1859 ntBASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav11A0A0B4J1J9 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Rncr4-201ENSMUST00000194541 2234 ntBASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Gm18755-201ENSMUST00000218030 1099 ntBASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 Gm10461-201ENSMUST00000202073 4786 ntBASIC13□□□□□ -0.33
Trav11A0A0B4J1J9 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 AC124603.1-201ENSMUST00000223843 308 ntBASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav11A0A0B4J1J9 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav11A0A0B4J1J9 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms