Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Gm6211-202ENSMUST00000167849 925 ntBASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col13a1Q9R1N9 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Col13a1Q9R1N9 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col13a1Q9R1N9 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col13a1Q9R1N9 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col13a1Q9R1N9 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Gm13146-201ENSMUST00000118508 780 ntBASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col13a1Q9R1N9 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 Arhgef33-211ENSMUST00000225658 473 ntBASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 Iqck-206ENSMUST00000208658 2891 ntBASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col13a1Q9R1N9 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col13a1Q9R1N9 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col13a1Q9R1N9 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Col13a1Q9R1N9 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Col13a1Q9R1N9 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC16.09■□□□□ 0.17
Col13a1Q9R1N9 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col13a1Q9R1N9 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col13a1Q9R1N9 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms