Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Prpf40aQ9R1C7 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.89■□□□□ 0.94
Prpf40aQ9R1C7 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Prpf40aQ9R1C7 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Prpf40aQ9R1C7 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.89■□□□□ 0.93
Prpf40aQ9R1C7 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.89■□□□□ 0.93
Prpf40aQ9R1C7 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Prpf40aQ9R1C7 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Prpf40aQ9R1C7 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Prpf40aQ9R1C7 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Prpf40aQ9R1C7 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Prpf40aQ9R1C7 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Gm27801-201ENSMUST00000184174 223 ntBASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Prpf40aQ9R1C7 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Prpf40aQ9R1C7 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Prpf40aQ9R1C7 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Prpf40aQ9R1C7 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Prpf40aQ9R1C7 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Prpf40aQ9R1C7 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Prpf40aQ9R1C7 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Gm15039-201ENSMUST00000118914 875 ntBASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Prpf40aQ9R1C7 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Prpf40aQ9R1C7 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Prpf40aQ9R1C7 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.83■□□□□ 0.93
Prpf40aQ9R1C7 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Prpf40aQ9R1C7 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Prpf40aQ9R1C7 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.83■□□□□ 0.93
Prpf40aQ9R1C7 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Prpf40aQ9R1C7 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.83■□□□□ 0.93
Prpf40aQ9R1C7 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Prpf40aQ9R1C7 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Prpf40aQ9R1C7 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Prpf40aQ9R1C7 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
Prpf40aQ9R1C7 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms