Protein–RNA interactions for Protein: Q9DB34

Chmp2a, Charged multivesicular body protein 2a, mousemouse

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2aQ9DB34 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.84■□□□□ 0.77
Chmp2aQ9DB34 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp2aQ9DB34 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp2aQ9DB34 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.83■□□□□ 0.77
Chmp2aQ9DB34 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.83■□□□□ 0.77
Chmp2aQ9DB34 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp2aQ9DB34 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Chmp2aQ9DB34 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.83■□□□□ 0.77
Chmp2aQ9DB34 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
Chmp2aQ9DB34 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chmp2aQ9DB34 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Reep4-203ENSMUST00000226563 1444 ntBASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Chmp2aQ9DB34 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Gm42778-201ENSMUST00000199644 553 ntBASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Chmp2aQ9DB34 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Chmp2aQ9DB34 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Chmp2aQ9DB34 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.78■□□□□ 0.76
Chmp2aQ9DB34 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 Gm8495-201ENSMUST00000188740 694 ntBASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 Gm38205-201ENSMUST00000192243 258 ntBASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Chmp2aQ9DB34 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
Chmp2aQ9DB34 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Gm42642-201ENSMUST00000200683 355 ntBASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Chmp2aQ9DB34 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms