Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx28Q9CWT6 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ddx28Q9CWT6 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Ddx28Q9CWT6 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC17.71■□□□□ 0.42
Ddx28Q9CWT6 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Gm9207-201ENSMUST00000198773 1115 ntBASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.7■□□□□ 0.42
Ddx28Q9CWT6 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Ddx28Q9CWT6 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx28Q9CWT6 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Ddx28Q9CWT6 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx28Q9CWT6 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx28Q9CWT6 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.68■□□□□ 0.42
Ddx28Q9CWT6 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx28Q9CWT6 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ddx28Q9CWT6 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 AC140930.3-201ENSMUST00000222935 274 ntBASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Ddx28Q9CWT6 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Ddx28Q9CWT6 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx28Q9CWT6 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx28Q9CWT6 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx28Q9CWT6 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms