Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Rab3c-203ENSMUST00000224180 967 ntBASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Gm13509-201ENSMUST00000119733 1308 ntBASIC26.29■■□□□ 1.8
Usp40Q8BWR4 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Usp40Q8BWR4 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 Gm37856-201ENSMUST00000191634 999 ntBASIC26.28■■□□□ 1.8
Usp40Q8BWR4 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Usp40Q8BWR4 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Usp40Q8BWR4 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC26.27■■□□□ 1.8
Usp40Q8BWR4 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Usp40Q8BWR4 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Usp40Q8BWR4 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Usp40Q8BWR4 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Usp40Q8BWR4 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Usp40Q8BWR4 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Gm22240-201ENSMUST00000175225 82 ntBASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Hsf1-207ENSMUST00000228371 2102 ntBASIC26.26■■□□□ 1.79
Usp40Q8BWR4 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Usp40Q8BWR4 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 AC135637.1-201ENSMUST00000227750 365 ntBASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Usp40Q8BWR4 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Usp40Q8BWR4 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Usp40Q8BWR4 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Usp40Q8BWR4 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Usp40Q8BWR4 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Usp40Q8BWR4 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Usp40Q8BWR4 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Usp40Q8BWR4 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Usp40Q8BWR4 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Usp40Q8BWR4 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Gm8520-201ENSMUST00000186517 868 ntBASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Gm37352-201ENSMUST00000193908 2181 ntBASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Usp40Q8BWR4 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Usp40Q8BWR4 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 67.6 ms