Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col11a1Q61245 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col11a1Q61245 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
Col11a1Q61245 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col11a1Q61245 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC21.7■■□□□ 1.06
Col11a1Q61245 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Col11a1Q61245 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col11a1Q61245 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC21.7■■□□□ 1.06
Col11a1Q61245 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.69■■□□□ 1.06
Col11a1Q61245 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC21.69■■□□□ 1.06
Col11a1Q61245 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col11a1Q61245 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col11a1Q61245 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Col11a1Q61245 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col11a1Q61245 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC21.68■■□□□ 1.06
Col11a1Q61245 Gm10231-201ENSMUST00000181584 441 ntBASIC21.68■■□□□ 1.06
Col11a1Q61245 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col11a1Q61245 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC21.68■■□□□ 1.06
Col11a1Q61245 Gm10175-202ENSMUST00000208752 441 ntBASIC21.68■■□□□ 1.06
Col11a1Q61245 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col11a1Q61245 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col11a1Q61245 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Col11a1Q61245 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col11a1Q61245 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col11a1Q61245 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col11a1Q61245 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col11a1Q61245 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col11a1Q61245 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.67■■□□□ 1.06
Col11a1Q61245 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Col11a1Q61245 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC21.67■■□□□ 1.06
Col11a1Q61245 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col11a1Q61245 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col11a1Q61245 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col11a1Q61245 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col11a1Q61245 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col11a1Q61245 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Col11a1Q61245 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col11a1Q61245 H2-K2-201ENSMUST00000174250 1049 ntBASIC21.66■■□□□ 1.06
Col11a1Q61245 Alkbh1-212ENSMUST00000185301 408 ntBASIC21.66■■□□□ 1.06
Col11a1Q61245 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC21.66■■□□□ 1.06
Col11a1Q61245 AC175538.1-201ENSMUST00000225343 1269 ntBASIC21.66■■□□□ 1.06
Col11a1Q61245 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col11a1Q61245 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col11a1Q61245 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col11a1Q61245 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Col11a1Q61245 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col11a1Q61245 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col11a1Q61245 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
Col11a1Q61245 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Col11a1Q61245 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col11a1Q61245 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.65■■□□□ 1.06
Col11a1Q61245 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col11a1Q61245 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col11a1Q61245 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC21.65■■□□□ 1.06
Col11a1Q61245 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC21.65■■□□□ 1.06
Col11a1Q61245 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col11a1Q61245 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col11a1Q61245 Gm5417-201ENSMUST00000079706 384 ntBASIC21.65■■□□□ 1.06
Col11a1Q61245 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Col11a1Q61245 Gm10819-201ENSMUST00000099988 561 ntBASIC21.65■■□□□ 1.06
Col11a1Q61245 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col11a1Q61245 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
Col11a1Q61245 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col11a1Q61245 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
Col11a1Q61245 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col11a1Q61245 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col11a1Q61245 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
Col11a1Q61245 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Col11a1Q61245 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC21.63■■□□□ 1.05
Col11a1Q61245 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC21.63■■□□□ 1.05
Col11a1Q61245 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col11a1Q61245 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col11a1Q61245 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Col11a1Q61245 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col11a1Q61245 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col11a1Q61245 Gm6433-201ENSMUST00000118634 875 ntBASIC21.62■■□□□ 1.05
Col11a1Q61245 Gm8668-201ENSMUST00000120559 1447 ntBASIC21.62■■□□□ 1.05
Col11a1Q61245 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col11a1Q61245 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col11a1Q61245 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col11a1Q61245 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms