Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usf1Q61069 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Usf1Q61069 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usf1Q61069 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usf1Q61069 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usf1Q61069 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Usf1Q61069 Gm18666-201ENSMUST00000190039 958 ntBASIC17.38■□□□□ 0.37
Usf1Q61069 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usf1Q61069 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Usf1Q61069 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Usf1Q61069 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Usf1Q61069 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Usf1Q61069 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC17.38■□□□□ 0.37
Usf1Q61069 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.37■□□□□ 0.37
Usf1Q61069 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Usf1Q61069 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.37■□□□□ 0.37
Usf1Q61069 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Usf1Q61069 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Usf1Q61069 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.36■□□□□ 0.37
Usf1Q61069 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Usf1Q61069 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.36■□□□□ 0.37
Usf1Q61069 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.36■□□□□ 0.37
Usf1Q61069 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC17.36■□□□□ 0.37
Usf1Q61069 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Usf1Q61069 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usf1Q61069 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usf1Q61069 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usf1Q61069 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usf1Q61069 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usf1Q61069 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usf1Q61069 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usf1Q61069 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.35■□□□□ 0.37
Usf1Q61069 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
Usf1Q61069 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC17.35■□□□□ 0.37
Usf1Q61069 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usf1Q61069 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.35■□□□□ 0.37
Usf1Q61069 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC17.35■□□□□ 0.37
Usf1Q61069 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.34■□□□□ 0.37
Usf1Q61069 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.34■□□□□ 0.37
Usf1Q61069 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.34■□□□□ 0.37
Usf1Q61069 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usf1Q61069 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usf1Q61069 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.33■□□□□ 0.37
Usf1Q61069 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC17.33■□□□□ 0.37
Usf1Q61069 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usf1Q61069 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
Usf1Q61069 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usf1Q61069 Gm11249-201ENSMUST00000117071 859 ntBASIC17.33■□□□□ 0.36
Usf1Q61069 Gm15565-201ENSMUST00000118890 427 ntBASIC17.33■□□□□ 0.36
Usf1Q61069 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usf1Q61069 Gm44549-201ENSMUST00000208351 577 ntBASIC17.33■□□□□ 0.36
Usf1Q61069 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.33■□□□□ 0.36
Usf1Q61069 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usf1Q61069 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usf1Q61069 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usf1Q61069 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usf1Q61069 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usf1Q61069 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC17.33■□□□□ 0.36
Usf1Q61069 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Usf1Q61069 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
Usf1Q61069 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.32■□□□□ 0.36
Usf1Q61069 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms