Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Nr1h4Q60641 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Gm10571-201ENSMUST00000097869 1638 ntBASIC18.11■□□□□ 0.49
Nr1h4Q60641 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 BC021767-201ENSMUST00000126387 1716 ntBASIC18.11■□□□□ 0.49
Nr1h4Q60641 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.11■□□□□ 0.49
Nr1h4Q60641 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Nr1h4Q60641 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Nr1h4Q60641 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Nr1h4Q60641 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Nr1h4Q60641 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Nr1h4Q60641 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Nr1h4Q60641 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
Nr1h4Q60641 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Nr1h4Q60641 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Nr1h4Q60641 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nr1h4Q60641 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nr1h4Q60641 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nr1h4Q60641 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Nr1h4Q60641 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nr1h4Q60641 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Nr1h4Q60641 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
Nr1h4Q60641 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Gm9959-201ENSMUST00000068277 390 ntBASIC18.07■□□□□ 0.48
Nr1h4Q60641 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Nr1h4Q60641 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Nr1h4Q60641 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.06■□□□□ 0.48
Nr1h4Q60641 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms