Protein–RNA interactions for Protein: P43680

Sox18, Transcription factor SOX-18, mousemouse

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox18P43680 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox18P43680 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox18P43680 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox18P43680 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.24■□□□□ 0.51
Sox18P43680 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
Sox18P43680 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Sox18P43680 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sox18P43680 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox18P43680 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox18P43680 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Sox18P43680 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.23■□□□□ 0.51
Sox18P43680 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox18P43680 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Sox18P43680 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox18P43680 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox18P43680 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Sox18P43680 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Sox18P43680 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Sox18P43680 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Sox18P43680 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Sox18P43680 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox18P43680 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Sox18P43680 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Sox18P43680 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Sox18P43680 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox18P43680 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.22■□□□□ 0.51
Sox18P43680 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Sox18P43680 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Sox18P43680 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
Sox18P43680 Gm2559-201ENSMUST00000201323 363 ntBASIC18.21■□□□□ 0.51
Sox18P43680 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.21■□□□□ 0.51
Sox18P43680 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Sox18P43680 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox18P43680 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Sox18P43680 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Sox18P43680 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Sox18P43680 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox18P43680 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox18P43680 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox18P43680 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox18P43680 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Sox18P43680 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Sox18P43680 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.2■□□□□ 0.5
Sox18P43680 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.2■□□□□ 0.5
Sox18P43680 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox18P43680 Gm9987-201ENSMUST00000069768 567 ntBASIC18.2■□□□□ 0.5
Sox18P43680 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Sox18P43680 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox18P43680 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sox18P43680 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sox18P43680 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox18P43680 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.19■□□□□ 0.5
Sox18P43680 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Sox18P43680 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.19■□□□□ 0.5
Sox18P43680 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Sox18P43680 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox18P43680 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Sox18P43680 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox18P43680 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox18P43680 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox18P43680 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox18P43680 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Sox18P43680 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.18■□□□□ 0.5
Sox18P43680 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.18■□□□□ 0.5
Sox18P43680 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.18■□□□□ 0.5
Sox18P43680 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Sox18P43680 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.18■□□□□ 0.5
Sox18P43680 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.18■□□□□ 0.5
Sox18P43680 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox18P43680 Gm43006-201ENSMUST00000197702 1602 ntBASIC18.18■□□□□ 0.5
Sox18P43680 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox18P43680 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox18P43680 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox18P43680 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Sox18P43680 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.17■□□□□ 0.5
Sox18P43680 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Sox18P43680 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms